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Added a pdf with orientation decoding notebook

master
Lev 2 years ago
parent
commit
837dbd860d
  1. BIN
      Decoded_Orientation.pdf
  2. 157
      PopulationSampling.ipynb

BIN
Decoded_Orientation.pdf

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157
PopulationSampling.ipynb

@ -84,18 +84,6 @@
"N = 40 # number of cells" "N = 40 # number of cells"
] ]
}, },
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false,
"pycharm": {
"name": "#%%\n"
}
},
"outputs": [],
"source": []
},
{ {
"cell_type": "code", "cell_type": "code",
"execution_count": 3, "execution_count": 3,
@ -410,60 +398,6 @@
"plt.imshow(res_reshaped[:, :, 0], cmap='viridis')" "plt.imshow(res_reshaped[:, :, 0], cmap='viridis')"
] ]
}, },
{
"cell_type": "markdown",
"metadata": {
"collapsed": false,
"pycharm": {
"name": "#%% md\n"
}
},
"source": [
"## Persistence for different dimensions"
]
},
{
"cell_type": "code",
"execution_count": 17,
"metadata": {
"collapsed": false,
"pycharm": {
"name": "#%%\n"
}
},
"outputs": [],
"source": [
"# persistence.persistence(res, 1)"
]
},
{
"cell_type": "code",
"execution_count": 18,
"metadata": {
"collapsed": false,
"pycharm": {
"name": "#%%\n"
}
},
"outputs": [],
"source": [
"# persistence.persistence(res, 2)"
]
},
{
"cell_type": "code",
"execution_count": 19,
"metadata": {
"collapsed": false,
"pycharm": {
"name": "#%%\n"
}
},
"outputs": [],
"source": [
"# persistence.persistence(res, 3)"
]
},
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": { "metadata": {
@ -834,6 +768,13 @@
"plt.scatter(phi_deg[::step], param_1)" "plt.scatter(phi_deg[::step], param_1)"
] ]
}, },
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#### Orientation is decoded:"
]
},
{ {
"cell_type": "code", "cell_type": "code",
"execution_count": 42, "execution_count": 42,
@ -983,90 +924,6 @@
"plt.title(\"Parameter 2 of CP vs. phase\")\n", "plt.title(\"Parameter 2 of CP vs. phase\")\n",
"plt.scatter(phi_deg[::step], param_2)" "plt.scatter(phi_deg[::step], param_2)"
] ]
},
{
"cell_type": "code",
"execution_count": 36,
"metadata": {
"collapsed": false,
"pycharm": {
"is_executing": true,
"name": "#%%\n"
}
},
"outputs": [
{
"ename": "IndexError",
"evalue": "index 288 is out of bounds for axis 0 with size 260",
"output_type": "error",
"traceback": [
"\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
"\u001b[0;31mIndexError\u001b[0m Traceback (most recent call last)",
"\u001b[1;32m/home/ennucore/dev/amgen/PopulationSampling.ipynb Cell 46\u001b[0m in \u001b[0;36m<cell line: 1>\u001b[0;34m()\u001b[0m\n\u001b[0;32m----> <a href='vscode-notebook-cell:/home/ennucore/dev/amgen/PopulationSampling.ipynb#ch0000042?line=0'>1</a>\u001b[0m plt\u001b[39m.\u001b[39mscatter([phi_deg[i] \u001b[39m*\u001b[39m \u001b[39m180\u001b[39m \u001b[39m/\u001b[39m np\u001b[39m.\u001b[39mpi \u001b[39mfor\u001b[39;00m i \u001b[39min\u001b[39;00m phi_reorder], [param_2[i] \u001b[39mfor\u001b[39;00m i \u001b[39min\u001b[39;00m phi_reorder])\n",
"\u001b[1;32m/home/ennucore/dev/amgen/PopulationSampling.ipynb Cell 46\u001b[0m in \u001b[0;36m<listcomp>\u001b[0;34m(.0)\u001b[0m\n\u001b[0;32m----> <a href='vscode-notebook-cell:/home/ennucore/dev/amgen/PopulationSampling.ipynb#ch0000042?line=0'>1</a>\u001b[0m plt\u001b[39m.\u001b[39mscatter([phi_deg[i] \u001b[39m*\u001b[39m \u001b[39m180\u001b[39m \u001b[39m/\u001b[39m np\u001b[39m.\u001b[39mpi \u001b[39mfor\u001b[39;00m i \u001b[39min\u001b[39;00m phi_reorder], [param_2[i] \u001b[39mfor\u001b[39;00m i \u001b[39min\u001b[39;00m phi_reorder])\n",
"\u001b[0;31mIndexError\u001b[0m: index 288 is out of bounds for axis 0 with size 260"
]
}
],
"source": [
"plt.scatter([phi_deg[i] * 180 / np.pi for i in phi_reorder], [param_2[i] for i in phi_reorder])"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false,
"pycharm": {
"is_executing": true,
"name": "#%%\n"
}
},
"outputs": [],
"source": [
"plt.scatter([theta_deg[i] for i in theta_reorder], [param_2[i] for i in theta_reorder])"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false,
"pycharm": {
"is_executing": true,
"name": "#%%\n"
}
},
"outputs": [],
"source": [
"phi_reorder[:10]"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false,
"pycharm": {
"is_executing": true,
"name": "#%%\n"
}
},
"outputs": [],
"source": []
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false,
"pycharm": {
"is_executing": true,
"name": "#%%\n"
}
},
"outputs": [],
"source": []
} }
], ],
"metadata": { "metadata": {

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