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Topology in neuroscience
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Some beautiful UMAP results 		2 years ago
data Add more exp data 2 years ago
exp Some beautiful UMAP results 2 years ago
model Exp processing: PCA and stuff 2 years ago
numerical Exp processing: PCA and stuff 2 years ago
results Added pdfs 2 years ago
ExpMoving.ipynb Separability; Distributions for neuron parameters 2 years ago
PopulationSampling.ipynb Processing experimental data for flashed gratings 2 years ago
README.md Add more exp data 2 years ago
Separability.ipynb Processing experimental data for flashed gratings 2 years ago
SimpleCell.ipynb Separability; Distributions for neuron parameters 2 years ago
TuningCurves.ipynb Working on the models 2 years ago
spike_train.png Add readme 2 years ago

README.md

Amgen Scholars Program Project

Using topological analysis on the neuronal activity in the visual cortex

  • model is the analytical model + topological analysis tools
  • data is the folder with experimental data
  • numerial is the numerical model by Loek
  • PopulationSampling is the notebook with the topological analysis of data produced by the analytical model
  • TuningCurves is the notebook that plots single tuning curves for the model
  • AnalyzeExp is the analytics of experimental data
  • See this pdf for the decoding of orientation using cohomological parametrization